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  SCIENCE FOUNDATION PROGRAM  
Handbook Contents
Introduction and Rationale
Learning Outcomes and Attendance
Admissions
Matriculation
 
Module Descriptions
Physics
Biology
Chemistry
Economics
Mathematics

 



BIOLOGY

Biology provides for the study of the structures and functions of living organisms and their interactions with their environment. In the course, we'll study the functions and processes of cells, tissues, organs, and systems within various species of living organisms. We will also consider the nature of science, cellular structure, processes and function of cells, tissues, organs, the molecules of life, the acquisition and use of energy by living organisms, the code of heredity, principles of genetics and genetic recombination We'll also look at the roles and interdependencies of organisms within populations, communities, ecosystems, and the biosphere.



Aim
The aim of this module is to introduce students to the broad scope of the biological sciences and to develop an understanding of the concepts of biological organization and function at different levels.

Learning Outcomes
After studying this module you should have acquired the following knowledge and skills:

Recognize the main levels within a taxonomic hierarchy and be able to describe the general features of all the kingdoms and selected phyla and classes. Students will also be able to discuss the principles of natural selection and its role in evolution and the principles of tropic interaction and population dynamics. You will have acquired an understanding of the fundamental life processes common to all living things and be able to discuss the metabolic processes underlying living systems. Students will also recognize the prokaryotic and the eukaryotic level of organization and be able to describe the structure and function of characteristic organelles. You will also be able to describe the structure and discuss the significance of viruses. The Human Biology component of this module will provide students with an understanding of human physiology. Students will be able to identify the human anatomy and discuss there function.

Module details

Language: English & Chinese
Duration: 6 week lecture period
Lectures: 30 lectures (2 hours lecture)
Tutorials: 10 (1 hour/tutorial)
Attendance: 12 hours per week
Assessments: Final exam 50%

Text Book

Essential Biology
Neil A. Campbell and Jane B. Reece
Higher Education Press
Pearson Education

 
           
             
        LECTURE TOPICS    
       

 

CELLULAR PROCESSES SECTION
1
Cell Structure
The microscope in cell studies and cells as the basic units of living organisms:
Prokaryotic Cells: The structure of a bacterial cell and its inclusions as illustrated by Escherichia coli; understand the roles of the cell wall, cell surface (plasma) membrane and its invaginations, flagella, bacterial chromosomes, plasmids, glycogen granules and lipid droplets; recognise and identify structures in electron micrographs of bacterial cells
Eukaryotic Cells: The organisation of eukaryotic cells as illustrated by a leaf palisade cell and a liver cell; recognise and identify the structure of these cells as revealed by light and electron microscopy; understand the magnification and resolution that can be achieved using light and electron microscopy; interpret electronmicrographs and identify the organelles; describe the structure and understand the roles of the nucleus, nucleolus, rough and smooth endoplasmic reticulum, Golgi apparatus, lysosomes, chloroplasts, mitochondria, ribosomes, centrioles and microtubules, the cellulose cell wall; describe the structure and understand the properties and roles of the cell surface (plasma) membrane.
2
Membranes
The fluid mosaic model of membrane structure and the significance of various membrane components and their function (phospholipids, glycolipids, cholesterol and intrinsic membrane proteins); Membrane dynamics and the various methods for exchanges between cells and their environment; Cell-water relationships in plants and animal and the mechanisms for movement across membranes such as diffusion and facilitated diffusion; the principles of osmosis in terms of the diffusion of water molecules from a higher to a lower water potential through a partially permeable membrane, the principles involved in active transport; endocytosis (phagocytosis and pinocytosis) and exocytosis. The role and structure of gap junctions; Membrane receptors and signaling between cells; Techniques used by biologist to study membranes.
   
3
Cell Surface Molecules
Major classes of cell surface molecules will be discussed including: Transport molecules, ion channels G protein linked receptors; Extracellular matrices (e.g. fibonectin, laminin and thrombospondin) and recognition molecules (e.g. MHC antigens); Role of cell surface receptors and their actions; Graphical representations of some cell surface molecules e.g cytoskeletal connections; Cadherin mediated Ca2+-dependent adherence of cells; Role of Connexins in direct cell communications; The cell signaling pathways; Receptor activation on inner surface membrane; Role of Transducin (GT) and second messengers e.g. calcium binding and phosphorylation of enzymes by kinases; The small G-proteins & related protein regulators of GTP hydrolysis:
   
4
Viruses
The structure and morphology of viruses; Infective nature of virus; Characteristics of virus life cycle; The lytic life cycle bacteriophages: penetration, replication, maturation, release and re-infection is discussed; Characteristics of virus life cycle (lysogenic and lytic life cycles); Quantification of viruses, culture and viral genomics; Viruses as agents of disease in man, animals and plants and their role in research.

METABOLISM SECTION

5
Molecules of Life (Part A)
‘Molecules of Life’ deals with the biochemical processes that occur within living cells and how these reactions are inter-connected in regulating physiological activities. Students will be introduced to the concept of metabolism and the properties and roles of some important biological molecules and major metabolic pathways. To begin, those biochemicals responsible for providing cellular energy, such as ATP, Acetyl CoA, NADH and FADH will be discussed with respect to their structure and function in driving metabolic pathways as follows:
Gluconeogenesis and Glycolysis
Glucose metabolism and the production of ATP and intermediates for biosynthetic pathways under aerobic and anaerobic conditions. Regulation of glycolysis and the allosteric inhibition of key enzymes and the cyclic AMP cascade. Overview of the metabolic relationships between proteins, carbohydrates and fats.
Glyconeogenesis
Definition of gluconeogenesis and the enzyme steps involved in glucogenesis. Local allosteric regulation of glycogenesis by adenine nucleotides (rate –limiting step) and global control via cAMP cascade in the liver in response to hormonal signals is discussed in depth.
Carbohydrates
Monosaccharides (hexoses and pentoses) and the role as monomers; structure and roles of the monosaccharides ??and ??glucose, ribose and deoxyribose; the roles of fructose and galactose; the composition of disaccharides and polysaccharides and the linking of monomers by glycosidic bonds; the synthesis and degradation (condensation and hydrolysis reactions) of disaccharides and polysaccharides; the monomers of and roles of the disaccharides (sucrose, maltose and lactose); the structure and roles of the polysaccharides starch (amylose and amylopectin);
Glycogen Metabolism
The structure and role of glycogen is discussed; the process of glycogen catabolism (glycogenolysis) and sythesis (glycogenesis) are also discussed with respect respect to allosteric inhibition of regulatory enzymes by nucleotides and calcium; role of insulin in glycogen metabolism and diseases
associated with glycogen metabolism.Glycogen storage diseases and the breakdown in regulation and interactions between glycogen, adrenalin and insulin in regard to cAMP cascade is discussed; cellulose chitin and glycogen; relationship between structure and function of these polysaccharides.
Lipids
The functions and the general nature of lipids as fats, oils and waxes is discussed including the digestion, absorbance, transport and distribution of lipoproteins in mammals; the structure of a triglyceride and the formation of ester bonds; Topics include: the transport of cholesterol and the role of VLDL, IDL, LDL and HDL lipoprotein particles; The roles of lipids as energy stores, and, in protection, waterproofing, insulation and buoyancy; the structure, properties and role of phospholipids and non-glycerol lipids in the cell membranes
Fatty Acid Metabolism
The structure and the physical and chemical properties of saturated and unsaturated fatty acids. Their transport across mitochondrial membrane; the degradation pathway of fatty acids and the generation of metabolic energy (?-oxidation pathway) and the synthesis of fatty acids and the inter-relationship between carbohydrates, lipid and protein metabolism is discussed.
Steroids
The general structure of steroids is discussed with regard to cholesterol metabolism and regulation of plasma levels in mammals. Further discussion focuses on incidence of Atheroschlerosis and elevated plasma cholesterol. The use of therapeutic lipid lowering agents is also mentioned.
6
Molecules of Life (Part B)
A continuation form lecture 5 we examine the macromolecules: Protein, DNA, RNA, and the chemicals used in their biosynthesis. For example: Amino acids for Proteins (workhorses: enzymatic activity, structural proteins, transport), Ribonucleotides for RNA and Deoxyribonucleotides for DNA
Amino Acid Metabolism
The structure of amino acids and their metabolic pathways (transamination, deamination and decarboxylation) will be discussed including the fate of ammonia (urea cycle) and disorders of the urea cycle (hyperammonemia, citrulonemia, argininosuccinicaciduria and hyperargininemia); the glucose-alanine cycle (common metabolic pathways from amino acid to ?-keto acids; the function of methyl group donors and the rare defects and genetic deficiencies of amino acid metabolism, including their treatment.
Proteins
The nature of amino acids as monomers in the formation of polypeptides and proteins; the formula and structure of amino acids; the linking of amino acids by peptide bonds to form polypeptides; the formation of a peptide bond; the importance of primary, secondary, tertiary and quaternary structure of enzymes; the role of condensation and hydrolysis reactions in the synthesis and degradation of polypeptides and proteins; the role of ionic, hydrogen and disulphide bonds in the structure of proteins as illustrated by insulin and collagen; the nature and roles of fibrous and globular proteins as illustrated by collagen and insulin. The general structure and function of immunoglobulins is also discussed
Vitamins and Minerals: the roles of vitamins as: cofactors, antioxidants, gene regulators and their specialized functions. The structure, properties and function of Vitamin A, D, E, and B will be discussed
Nucleotide Metabolism
During this lecture you will be introduced to the biosynthetic pathways for the production of purines (De novo pathway), pyrimidines, mono- and tri-phosphates, ribo- and deoxyribo-nucleotides, thymidine synthesis and the salvage pathways. The mechanisms regulating the rates of synthesis of nucleotides and the diseases associated with defects in nucleotide metabolism (Lesch Nyhan syndrome and SCID)
7
DNA, RNA and Protein I
The composition of ribonucleic acid (RNA) and deoxyribonucleic acid (DNA); basic structure of a mononucleotides (thymine, uracil and cytosine as pyrimidines; adenine and guanine as purines); condensation reactions and the formation of mononucleotides and polynucleotides (DNA and RNA); the structure and roles of messenger and transfer RNA; the structure of DNA (base pairing and the double helix); the mechanism of replication of DNA (semiconservative).
8
Lecture 8 DNA, RNA_and Protein II
the nature of the genetic code; gene structure and code; the processes of transcription and translation in the synthesis of proteins (for example milk production) ; the function of the ribosomes, codons and anticodons in relation to messenger and transfer RNA; the Human Genome Project.
ENZYMOLOGY SECTION
9
Enzyme Properties and Classification
Classification according to E.C.; The major enzyme classes and their actions (oxidoreductases, transferases, hydrolases, lyases, isomerases and ligases); a detailed discussion of the types and structures of cofactors; the mechanism of activator ions (metal ions, cosubstrates and prosthetic groups) in regulating enzyme activity;
10
Enzyme Kinetics and Regulation
The concept of the active site and specificity of isozymes; Active site-directed and non-active site-directed specificity, the biological significance of isozymes and their potential use for clinical diagnosis; the three levels of enzyme specificity; two models of enzyme-substrate interactions. Factors affecting enzyme activity (temperature: Q10 values, pH, substrate and enzyme concentrations); initial velocity as a function of substrate concentration; the effects of varying substrate concentration; Michaelic-Menten Model; Determination of Km and Vmax (Lineweaver-Burk Plot and Woolf Plot); Inhibition of enzyme activity (Irreversible and reversible) and thermal denaturation; the commercial uses of enzymes as pectinases in food modification and proteases in biological detergents;
ENERGETICS SECTION
11
Cellular Respiration
The role of respiration as an energy-releasing process is discussed with reference to the following topics: Glycolysis and the Krebs Cycle; Oxidative Phosphorylation and the mitochonria; the effects of uncoupling reagents; Anaerobic respiration (fermentation/lactic acid production); Aerobic respiration and the effects of asphyxiation and poisoning.
12
Photosynthesis
The biochemistry of photosynthesis and respiration are studied in order to enable understanding of how ATP is generated and how biological compounds are synthesized, in this regard the use of isotopes to study plant photosynthesis is also discussed. A closer look at the physiology of plants cells and the role of chloroplasts with regard to light dependent and independent reactions is also given. The role and arrangement of photosynthetic pigments is discussed including the photosynthetic electron transfer chain. Topics in Plant Science include basic plant structure and function. This will include the anatomy and physiology of the plant cell, tissues, roots, stems, and leaf growth and development.
CELL AND NUCLEAR DIVISION SECTION
13
Mitosis and Meiosis
This lecture will centre on the replication and division of nuclei and cells. Students will gain an understanding of chromosome behaviour in mitosis and meiosis. In addition, we will examine the structure of a chromosome; the behaviour of chromosomes during the cell cycle stages of meiosis and mitosis; the events of prophase, metaphase, anaphase and telophase; the significance of meiosis and mitosis on chromosome number and variation in relation to daughter nuclei chromosomes numbers and type; the production of new individuals and the transfer of genetic information from parent to offspring; the nature of natural and artificial cloning in plants and animals.
GENETICS AND SELECTION SELECTION
14
Genetic Code
This section explores some of the ways in which the understanding of genes that has been developed over the past half century is being applied. Elucidation of the structure and functions of nucleic acids has helped to explain how genes incorporate coded information which determines the nature of organisms, and how, during the cell cycle and sexual reproduction, genetic information is copied and passed on.
15
Inherited Change
The passage of information from parent to off-spring, including the nature of genes and alleles and their role in determining the phenotype is discussed under the following topics:
Monohybrid inheritance: inheritance of single characteristic according to Mendel’s first law or principle of segregation. Dihybrid inheritance: Two pairs of alleles are considered with respect to Mendel’s Second Law or principle of independent assortment.
Linked genes (Genes located on the same chromosome) and sex linked genes are described with examples of X-linked traits, such as red-green colour blindness, haemophila and premature balding. Gene Interaction is also discussed with regard to the interaction of genes leading to incomplete dominance or recessiveness as in the case of human blood groups.
Variations based on phenotypic differences (discontinuous and continuous) will be discussed with examples such as the blood groups in Man; sex in plants and animals and wing length in Drosophilia,) and continuous (multifactorial inheritance)
16
Mutations in Genes
The causative agents of mutation and the implications on somatic and germline genetic material are discussed in reference to the effects on gene function (Null, hypomorph, hypermorph, ectopic expression, etc.). The effects of DNA mutation on proteins (temperature sensitive mutations in Siamese cats) is discussed including point mutations (missense, silent and nonsense) and frameshift mutations. Case studies include: Sickle Cell Anemia; Familial Hypercholesterolemia; Glucose-6-phosphate dehydrogenase deficiency; various defects in amino acid metabolism (Phenyketonuria; Tyrosinaemia; Alkaptonuria; Goiterous Cretinism; Albinism) and carbohydrate metabolism. DNA repair systems and the mechanisms are also discussed.
17
Chromosomal Mutations
Students will learn about the two groups of chromosomal mutation (Non-disjunction and structural) and the techniques for detecting human chromosomal disorders. The classification of chromosomes and application in medical karyotying (chromosome map) is discussed with respect to the types of syndromes resulting from chromosomal mutation(s). The consequence of sex linked disorders (nondisjunction) is discussed with reference to the following: Turner’s; Kleinfelter’s; Triplo-X syndromes; and Down Syndrome. Structural changes (macromutations) in chromosomes (inversions, deletions, duplications, etc) is discussed with examples such as Cri-du-chat Syndrome; Prader-Willi Syndrome; Chronic myelogenous leukemia etc. The use of FISH to detect translocations is also illustrated.
EVOLUTION AND ECOLOGY SECTION
18
Diversity and Evolution
This lecture begins with an introduction to the unit and diversity of life that has resulted through evolutionary adaptation followed by taxonomy of life forms and the basis for bionomial nomenclature. A historical review leading to our present understanding about life on earth according to the observations of Charles Darwin and his theory of evolution by natural selection. An account of the processes that have transformed life including the role of genes and the agents of evolutionary change such as Mutation, Gene Flow (Migration and Hybridization), Nonrandom Mating, Genetic Drift (Founder Effect and Bottleneck Effect), Selection (Artificial and Natural). The types of natural selection that cause a change in allele frequency will also be discussed with reference to examples. Students will be introduced to the Hardy-Weinberg Principle the aspects that determine the population dynamics. The dynamics and mechanisms of marco- and micro- evolution and speciation. The patterns of speciation (Gradualism and punctuated equilibrium) and reduction in variation due to pre- and post- zygotic barriers. The effects of convergent evolution, in-breeding and out-breeding and genetic drift are also discussed.
19
Introduction to Ecology
Ecology is the study of ecosystems: how they function, achieve balance and continually change. Environmental science is the study of how humans and other species interact with one another and with the non-living environment. Consideration is given in this module to the important principles underlying the maintenance of ecosystems, the levels of biological organization, the ecosphere compartments and interactions, and ecological energetics and trophic levels including energy flow and nutrient cycles, the dynamics and stability of ecosystems and the effects of human activity. Ecological homeostasis is discussed with regard to energetics, the second law of thermodynamics, photosynthesis, Gross Primary Production (GPP) and energy efficiencies (The 10% law). The dynamics of populations and communities is also discussed with reference to population growth curves, Y and K selection, Biogeochemical nutrient cycles (The Phosphorus cycle, water cycle, nitrogen cycle, fixation and the carbon cycle).
HUMAN PHYSIOLOGY SECTION
20
Homeostasis
As the name implies, processes by which the human body actively maintains stable conditions through feedback systems will be discussed with regard to the internal components of homeostasis and control systems (Extrinsic and Intrinsic). The components of negative and positive feedback mechanisms/ loop will be discussed with reference to TSH, oxytocin production, enzyme regulation, hormone actions and blood pressure homeostatis. Imbalances in homeostasis with regard to disorders and disease conditions will also be discussed
21
Circulatory System
In this lecture students will be introduced to human physiological aspects of: respiration with discussions on the respiratory system anatomy; pulmonary ventilation; heart-lung anatomy and function; the exchange and transport of gases in the blood; Constituents, formation and functions of blood (also blood typing); structure and function of blood vessels: Arteries, Capillaries and Veins; Factors affecting circulation including Capillary Exchange. A detailed discussion about the generation and conduction of the cardiac impulse in the human heart including: the uses of the ECG; the basis and interpretation of common abnormalities of rhythm and conduction; the correlation of pressure, volume and electrical changes occurring in the heart during the cardiac cycle.
Physiological processes which control the rate and output of the heart and the blood pressure will be discussed including: the medullary centre; innervation of heart and blood vessels; function of baroreceptors; circulatory reflexes and the effects of circulating hormones.
22
Immunology
This lecture provides an introduction to the human body’s ability to resist or eliminate potentially harmful foreign materials or abnormal cells. Discussions will consist of the following points: Humoral (B lymphocytes) and cell-mediated (T cells) immune responses; Specific and Non-specific immune responses; Description and function of lymphatic vessels; lymphoid cells, tissues & organs; and resistance to disease. The mechanism of T and B lymphocytes action against invading pathogens (viruses & bacteria) will also be discussed and the removal of 'worn-out' cells (e.g., old RBCs) and tissue debris (e.g., from injury or disease); Identification and destruction of abnormal or mutant cells (primary defense against cancer) including the rejection of 'foreign' cells (e.g., organ transplant) and inappropriate responses such as allergies and autoimmune diseases. The structure and classification of antibodies will be discussed including their primary and secondary responses in the development of active and passive immunity.
23
Digestive System (Gastro-Intestinal Tract)
This lecture provides a broad understanding of the functions, controls (Extrinsic and Intrinsic nerves and hormones) and anatomy of the GIT. In addition, the general principles of motility, including disorders of motility is discussed. Histological aspects of the alimentary canal is also discussed including the anatomy, function and secretion of gastric juices by the stomach. In this regard the action of exocrine gland cells is also explained and the major reactions leading to the secretion and control of HCl secretion by the parietal cell. The properties and function of the small intestine is included with reference to the chemical digestion of the following: Carbohydrates, Protein lipid digestion and nucleic acid digestion; The phases of gastric secretion in relation to feeding and the factors responsible for each phase are discussed. Peptic Ulcer Disease is also discussed with regard to the causative agent and likely treatments. The role of the pancreas (pancreatic juices) and liver anatomy and function are also discussed. The action and release of bile by the gall bladder is discussed in addition to the anatomy and histology of the gall bladder. The functions of the large intestine is also discussed.
24

Renal Physiology
Students will understand the effects of constriction/dilation of afferent and efferent arterioles on glomerular filtration rate (GFR) and renal blood flow (RBF).

The student will be able to describe the mechanisms controlling constriction and dilation of the afferent and efferent arterioles of the glomerulus.

The student will be able to explain how a change in renal blood flow will affect GFR, and what autoregulatory hormonal and neural mechanisms will function to maintain GFR, RBF, filtration fraction and fluid reabsorption in the proximal tubule.

Describe the physiology and integration of the above systems and the overall control of body fluid volume, tonicity and pH, together with development of some pathophysiological changes occurring in these systems in major disease states
• Water balance and body fluid composition
• Anatomy and physiology of the nephron.
• Renal concentrating and diluting mechanisms
• Urine formation and composition. Renal function tests. Micturition
• Renal pathophysiology. Acid base balance

25
Nervous System Introduction
This introductory lecture will provide an understanding of the functions of the nervous system and its development as an important adaptation in the evolution of body size and mobility. An overview the human nervous system structure (divisions) and its role in sensory and motor processes. Nerve tissue structural and functional classifications will also be discussed including: Nerves and the Nervous System; Resting membrane potential; Neurons their classification & Neuroglia cells; The role of myelin and neuronal membranes; The cell membrane potential (resting potential) and transmission of nerve impulses; Ion diffusion, active transport and potassium flux across membranes; and Threshold stimulus & action potential
26
Central Nervous System/Peripheral Nervous System
In this lecture, structures and divisions of the human brain (CNS) with respect to the functional aspects of the brain, brain stem and spinal cord will be discussed in depth. The effects of neuronal injury (stroke) and recovery will also be discussed as will diseases of the CNS (Multiple Sclerosis, Alzheimer’s Disease, Parkinson’s Disease and Amyotrophic Lateral Sclerosis).
The major divisions of the PNS (Somatic Nervous System and Autonomic Nervous System) and the functional divisions will be discussed in this lecture. Communication pathways: somatic (afferent, efferent) and Visceral (afferent, efferent) neurons will also be discussed.
27
Synapse and Neurotransmitters
Students will be introduced to the action of neurotransmitters in the PNS; The types of neurotransmitters (classification) will also be discussed in relation to their accumulation; functions and locations of release within the nervous system.
28
Endocrine System and Hormone Action
In this lecture students will be introduced to the main classes of hormones and their mode of action in regulating cellular functions. In particular the role of glands (Pituitary, Hypothalamus, adrenal, etc.) and the production of hormones (FSH, LH, Prolactin, Growth Hormone, ACTH, TSH, etc.) will be discussed with respect to their action on target organs and glands. We will also discuss the regulation of blood calcium levels, PTH secretion, blood glucose and blood pressure and volume by hormone action. Topics include the activation of the second messenger system and the use of commercially available hormones.
29 Reproduction
The anatomy and function of the male reproductive system. Topics discussed in this lecture include:
The function of Sertoli cells and sustentacular cells in male testis
Process of producing spermatozoa and the role of seminal vesicles and prostate gland.
Hormonal control of spermatogenesis and the effects of testosterone and DHT
The urogenital anatomy
The anatomy and function of the female reproductive system and cycle is discussed in reference to the following subjects:
Female reproductive anatomy and function of ovaries, uterine tubes, uterus, vagina and mammary glands
The process of oogenesis and the ovarian cycle and uterine (menstrual) cycle
The role of hormones in derived from the hypothalamus, anterior pituitary gland and ovaries in regulating the female reproductive cycle
30
Muscle Physiology
The key concepts covered in this lecture include 1) the functional characteristics of muscles; 2) muscle structure; 3) muscle contractions and 4) force response. The role of sarcolemma, T-tubules, sarcoplasmic reticulum and calcium during nervous impulse will be discussed in relation to the function of calcium and troponin in causing a movement in the attached tropomyosin molecule and actin myofilament (Cross-bridge Cycle). Other aspects of muscle force such as force modulation and response; electro-myography; length-tension relationship; and types of contractions will also be discussed.

 

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